the 04-05's had a slightly smaller volume\ more closed combustion chamber design...as well as a higher volume\ lower velocity intake port:
and the 06 & up models have a slightly more open combustion chamber of higher volume....with a velocity increasing , smaller tapered volume intake port:
if you look at the combustion chamber areas between the exhaust valves, you can see the shape\volume differences...
hope that clears up some of the questions about the differences.. :)
04-05 combustion chamber:

06 & up combustion chamber:



